Hi, I'm Yong-Yub

Researcher

Experience in ocean dynamical downscaling (ROMS) and S2D earth system predictability (CESM2, NorESM)

Contact Me

About Me

My introduction

Researcher, with years of experience in ocean dynamical downscaling, developing a seasonal to decadal prediction system using earth system model in ICCP

3+ Years
experience
4+ completed
project
8+ published
paper

Skills

My technical level

Numerical modeler

More than 9 years

ROMS

80%

CESM2

80%

MOM4

40%

Data Analyst

More than 10 years

MATLAB

80%

Shell Script

60%

Ferret

50%

CDO

50%

Python

80%

Qualification

My personal journey
Education
Work

Ocean Science (Bachelor)

Inha University
2009 - 2015

Physical Oceanography (Master)

Seoul National University
2015 - 2017

Physical Oceanography (PhD)

Seoul National University
2017 - 2022

Research trainee

Korea Institute of Ocean Science and Technology (KIOST)
2012 - 2018

Postdoctoral Fellow

IBS Center for Climate Physics
2022 - 2025

Postdoc

Geophysical Institute, University of Bergen; Bjerknes Centre for Climate Research
2026 -

Publications

Peer-reviewed publications

Under Review

Lee, S.-T., Y.-J. Tak*, Y.-Y. Kim and S. Lee
Asymmetric warming distortions of mid-latitude ocean seasonality revealed by peak and duration indices
Nature Communications

To be updated

Oh, H., K. Alexia, Y.-Y. Kim, and C. L. E. Franzke*
Climate-Driven Predictability of Malaria Transmission over Africa on Multi-year Timescales
Nature Communications

To be updated

Kang, Y.-K., Y.-K. Cho, S.-G. Oh, Y.-Y. Kim, B.-G. Kim*, G.-H. Seo and K.-Y. Jeong
High-Resolution Dynamical Downscaling Alters the Time of Emergence of Sea Level Rise in the Northwestern Pacific
Earth's Future

To be updated

Hasan, N. A.*, Y. Chikamoto, W Zhang, M J McPhaden, M. F. Stuecker, J.-Y. Lee, Y.-Y. Kim and S.-S. Lee
Dynamics and Predictability of the 2020–2023 La Niña Initiation through Tropical Inter-Basin Interaction Using CESM2 Hindcast Experiments
Climate Dynamics

To be updated

Karwat, A.*, J.-Y. Lee*, C. Franzke, Y.-Y. Kim , E. Y. Kwon, R. C. Garrett and S.-S. Lee
Marine Heat Waves in Vulnerable Coral Reef Regions are Skillfully Predictable on Multi-year Timescales
Nature Communications

To be updated

2026

Kim, Y.-Y., J. Lien*, K. B. Rodgers, J.-Y. Lee and F.-F. Jin
Exploring Marine Biogeochemical Prediction with Linear Dynamical Frameworks
Geophysical Research Letters

Prediction of marine primary production (PP) forms the basis for forecasting marine ecosystems. Despite many prediction approaches, few have used linear dynamics to investigate PP predictability. Here, we implement Linear Inverse Models (LIM) to examine the predictability of PP in the eastern Pacific. Forecast skill substantially improves when moving from white-noise-only LIMs to those incorporating colored-noise, revealing a role for temporally correlated climate forcing in extending predictability. Seasonally varying dynamics also contribute to enhancing forecast skill, particularly within the first annual cycle. Sea surface temperature and sea-level provide the primary source of long-term memory for extended forecasts. Building on this memory, the inclusion of the biolimiting nutrient iron further enhances predictive skill by interacting with these physical drivers, despite its inherently high short-term variability. This insight has broader implications for marine biogeochemical prediction and data-driven forecasting more generally, highlighting the role of memory interactions among predictors in improving forecast performance.

Kim, C, Y.-J. Tak*, G Kim, S Jung, H K Jung, Y.-Y. Kim and Y.-K. Cho
Extreme coastal marine cold spells in the East/Japan Sea intensified by low-salinity water
Environmental Research Letters

Global ocean warming has led to a projected decrease in the frequency and intensity of marine cold spells (MCSs). However, the East/Japan Sea presents a climatic paradox, as winter MCSs continue to occur despite a clear, long-term warming trend. This study investigates the mechanisms underlying the sustained occurrence of these events. Quantitative analysis of the mixed-layer heat budget indicated that extreme coastal cold anomalies are closely linked to the intensified southward flow of cold and less saline North Korea Cold Water (NKCW) from East Korea Bay. The combined dynamics of horizontal advection and vertical entrainment demonstrate a synergistic mechanism: this low-salinity intrusion establishes a robust haline stratification that restricts vertical mixing, traps cold water at the surface to sustain continuous atmospheric heat loss, and enhances severe cooling. Further time-lagged correlation analyses indicated that the low-salinity coastal conditions associated with these winter MCSs originated from freshwater inflow through the Korea Strait (KS) during the preceding summer and autumn. Considering that the CMIP6 climate change scenario projections indicate an increase in the Changjiang River discharge, which is the primary freshwater source through the KS, these findings suggest that salinity-induced density changes can act as a critical precondition for sustaining the potential for coastal MCSs in a warming ocean.

Lien, J.*, H. Ando, Y.-Y. Kim and I. Richter
Moment-based approach to cyclostationary nonlinear inverse modeling under persistent noise forcing
Physical Review Research

This study extends the moment-based nonlinear inverse modeling (nLIM) framework from the stationary to the cyclostationary (CS) regime, introducing CS-Colored-nLIM. The proposed method constructs a periodic, colored-noise-forced, quadratic stochastic system from cyclostationary input data. In this formulation, the active nonlinear components can be empirically determined through a sparse identification scheme specifically developed for colored-noise-forced systems. Application to climate prediction demonstrates that CS-Colored-nLIM achieves predictive performance comparable to modern machine learning and statistical models, while offering greater flexibility with moderate computational demand, making it potentially applicable to a broader range of complex systems beyond climate dynamics.

2025

Lien, J.*, H. Ando, Y.-Y. Kim, and T. Tozuka
A linear inverse modeling approach to estimating Liang-Kleeman information flow
Physical Review E

The Liang-Kleeman (LK) information flow provides a powerful framework for quantifying causality among variables, while linear inverse modeling (LIM) offers an effective empirical approach to studying the dynamical evolution of system states from input data. In this study, we unify these two concepts by proposing the LIM-LK framework—a data-driven method for estimating LK information flow from input data using LIM. Beyond capturing causality among state variables, the proposed framework establishes a direct connection between causality and system dynamics, and also enables the quantification of entropy transfer from the ambient environment to the system through both memoryless and persistent stochastic forcing. The effectiveness of this unified approach is demonstrated through an application to the interaction between the Pacific and Indian Oceans, offering both causal and dynamical insight into ocean variability and its seasonal modulation.

Kim, Y.-Y., J.-Y. Lee*, Y. Chikamoto*, A. Timmermann, S.-S. Lee, E. Y. Kwon, W. Park, N. Hasan, I. Bethke, F. Fransner, A. Karwat, A. Subrahmanian and C. L. E. Franzke
Robust Estimates of Earth System Predictability of the 1st Kind using the CESM2 Multiyear Prediction System (CESM2-MP)
Bulletin of the American Meteorological Society

Here, we present a new seasonal-to-multiyear Earth prediction system, Community Earth System Model, version 2, multiyear prediction system (CESM2-MP), based on the CESM2. A 20-member ensemble that assimilates oceanic temperature and salinity anomalies provides the initial conditions for 5-yr predictions from 1960 to 2020. We analyze skills using pairwise ensemble statistics, calculated among individual members (IMs), and compare the results with those obtained from the more commonly used ensemble-mean (EM) approach. This comparison is motivated by the fact that an EM of a nonlinear dynamical system generates, unlike reality, a heavily smoothed trajectory, akin to the evolution of a slow manifold. However, for most autonomous nonlinear systems, the EM does not even represent a solution of the underlying physical equations, and it should therefore not be used as an estimate of the expected trajectory. The IM-based approach is less sensitive to ensemble size than EM-based skill computations, and its estimates of attainable prediction skills are closer to the actual skills. Using IM-based statistics helps to unravel the physics of predicted patterns in the CESM2-MP and their relationship to ocean–atmosphere–land interactions and climate modes of variability. Furthermore, the IM-based method emphasizes predictability of the first kind, which is associated with initial error sensitivity. In contrast, the EM-based method is more sensitive to the predictability of the second kind, which is associated with the external forcing and time-varying boundary conditions. Calculating IM-based skills for the CESM2-MP provides new insights into the sources of predictability originating from ocean initial conditions, helping to delineate and quantify the forecast limits of internal climate variability.

Lee, S. T., Y.-Y. Kim*, Y. J. Tak*, S. Chae and Y. K. Cho
Seasonal and interannual variations in material transport in the Korea Strait originating from the Taiwan Strait
Scientific Reports

Understanding the variability in material transport from the Taiwan Strait (TS) to the Korean Strait (KS) is crucial for predicting ecological changes and the spread of marine debris in the East Asian Marginal Seas (EAMS). However, the dynamic variability of this transport remains poorly understood. In this study, we investigated the dynamic variability of material transport from the TS to the KS, using a Lagrangian particle-tracking system coupled with a three-dimensional numerical model. The model results showed that particles originating from the TS most frequently passed through the KS in August, with distinct interannual variability. Our findings indicate that southerly winds enhance the sea surface height (SSH) gradient in the southwestern East China Sea (ECS) shelf region through surface Ekman transport, weakening cross-shelf offshore currents and preventing particles from being transported offshore. The interannual variability of southerly winds is associated with variations in SSH in the southwestern shelf region, thereby modulating material transport from the TS to the KS. Furthermore, southerly winds over the EAMS are found to strengthen during negative phases of the Pacific Decadal Oscillation, suggesting a potential linkage between material connectivity in the EAMS and large-scale climate indices. These findings reveal how physical processes govern material transport in the EAMS, offering valuable insights into the prediction of nutrient fluxes and pollutant dispersion.

2024

Kim, Y.-Y., S.-T. Lee, B.-G. Kim, Y.-K. Cho, C. I. Lee, S. Kim and Y.-J. Tak*
Severe reduction in spawning area and larval abundance of walleye pollock under future warming in the western East/Japan Sea
Environmental Research Communications

The collapse of walleye pollock catch in the Korean fishing region during the late 1980s remains unresolved despite enormous efforts to recover its stock. To investigate the future fate of walleye pollock in the western East/Japan Sea (EJS) in the late 21st century, we implemented a dynamical downscaling approach by developing high-resolution regional ocean climate models (1/20°) with the selected Coupled Model Intercomparison Project 6 (CMIP6) global climate models. We analyzed the changes in the spawning days and larval distribution of walleye pollock in the western EJS. Under the SSP5–8.5 global warming scenario, the suitable spawning period ratio of walleye pollock was drastically reduced by 76%. The severe reduction in spawning days in the western EJS was mainly attributed to ocean warming caused by a decrease in atmospheric surface cooling. Moreover, our particle tracking experiment showed substantial loss of eggsand larvae south of 38° N. Our study projected a drastic collapse of walleye pollock in the western EJS and proposed a variety of collapse patterns based on local circulation under future warming conditions. These findings can help the local fishing industry adapt and assist neighboring governments in planning future fisheries management strategies.

2023

Tak. Y.-J., Y.-K. Cho*, H.-J. Song, S.-H. Chae and Y.-Y. Kim
Spatial similarity between the Changjiang diluted water and marine heatwaves in the East China Sea during summer
The Sea: Journal of the Korean Society of Oceanography

Marine heatwaves (MHWs), referring to anomalously high sea surface temperatures, have drawn significant attention from marine scientists due to their broad impacts on the surface marine ecosystem, fisheries, weather patterns, and various human activities. In this study, we examined the impact of the distribution of Changjiang diluted water (CDW), a significant factor causing oceanic property changes in the East China Sea (ECS) during the summer, on MHWs. The surface salinity distribution in the ECS indicates that from June to August, the eastern extension of the CDW influences areas as far as Jeju Island and the Korea Strait. In September, however, the CDW tends to reside in the Changjiang estuary. Through the Empirical Orthogonal Function analysis of the cumulative intensity of MHWs during the summer, we extracted the loading vector of the first mode and its principal component time series to conduct a correlation analysis with the distribution of the CDW. The results revealed a strong negative spatial correlation between areas of the CDW and regions with high cumulative intensity of MHWs, indicating that the reinforcement of stratification due to low-salinity water can increase the intensity and duration of MHWs. This study suggests that the CDW may still influence the spatial distribution of MHWs in the region, highlighting the importance of oceanic environmental factors in the occurrence of MHWs in the waters surrounding the Korean Peninsula.

2022

Kim, Y.-Y., Y.-K. Cho*, Y.-K. Kang, S.-T. Lee, H. K. Jung, C. I. Lee, S. Kim, K.-Y. Jeong and D.-S. Byun
Potential Impact of Late 1980s Climate Change on the Collapse of Walleye Pollock Catch in the Western East/Japan Sea
Frontiers in Marine Science

Walleye pollock (Gadus chalcogramma) caught in the Korean fishing area dramatically decreased in the late 1980s. To investigate the potential impact of the late 1980s climate regime shift on the collapse of the pollock catch, we developed a three-dimensional hydrodynamic model with data assimilation and a particle tracking model. Data-assimilated reanalysis showed that sea surface temperature increased by approximately 2°C in the spawning area of pollock in the late 1980s. The suitable spawning area in the East Korean Bay decreased due to warming in the late 1980s. Spawned eggs of walleye pollock were tracked using a particle tracking model for 30 days in January and February during 1983–1992. The number of individuals transported to the nursery within the Korean fishing area from the spawning area was reduced by 74% in the late 1980s. The intensified East Korean Warm Current (EKWC) could be responsible for the decreased number of individuals transported to the southern area in the late 1980s. Warming in the Korean fishing area could also cause a decrease in pollock. These oceanic changes might be linked to climate regime shifts in the late 1980s. The warming regime with positive Arctic Oscillation and weakened monsoon intensified the northward flow of the EKWC and accelerated the warming of the spawning and fishing areas in the late 1980s.

Tak Y.-J., Y.-K. Cho*, J. Hwang and Y.-Y. Kim
Assessments of nitrate budgets in the Yellow Sea based on a 3D physical-biogeochemical coupled model
Frontiers in Marine Science

Nitrate (NO3–) plays an important role in ecosystems and aquaculture in the Yellow Sea (YS). Sparse observational data suggest that ocean currents and nitrification are crucial to NO3– flux in the YS; however, a quantitative assessment of these fluxes has not yet been performed. This study investigates seasonal and spatial variations in NO3– flux via currents and biological processes in the YS from 2006 to 2019 using a physical-biogeochemical coupled model. The model results show that the current-driven fluxes exceeded biological processes in the eastern and central regions of the YS, unlike in the western and northern regions. Advection of NO3– in the YS is mainly driven by cyclonic circulation in summer and fall, and anticyclonic circulation in spring and winter. The Subei Coastal Current along the coast of China plays a primary role in net advective influx of NO3– to the YS year round. The NO3– influx by the Yellow Sea Warm Current along the lower layer of the southcentral YS is offset by outflux through wind-driven surface currents in winter. The southward movements of the Yellow Sea Bottom Cold Water in summer and the Korean Coastal Current in winter are major NO3– outfluxes to the East China Sea. In terms of biological processes, NO3– is mainly consumed by phytoplankton during the spring bloom and supplied through organic matter decomposition and nitrification. Net supply of NO3– by biological processes was the greatest in the southcentral YS where the Yellow Sea Bottom Cold Water is present.

2021

Kim, Y.-Y., B.-G. Kim, K. Y. Jeong, E. Lee, D.-S. Byun and Y.-K. Cho*
Local sea level rise caused by climate change in the Northwest Pacific marginal seas using dynamical downscaling
Frontiers in Marine Science

Global climate models (GCMs) have limited capacity in simulating spatially non-uniform sea-level rise owing to their coarse resolutions and absence of tides in the marginal seas. Here, regional ocean climate models (RCMs) that consider tides were used to address these limitations in the Northwest Pacific marginal seas through dynamical downscaling. Four GCMs that drive the RCMs were selected based on a performance evaluation along the RCM boundaries, and the latter were validated by comparing historical results with observations. High-resolution (1/20°) RCMs were used to project non-uniform changes in the sea-level under intermediate (RCP 4.5) and high-end emissions (RCP 8.5) scenarios from 2006 to 2100. The predicted local sea-level rise was higher in the East/Japan Sea (EJS), where the currents and eddy motions were active. The tidal amplitude changes in response to sea-level rise were significant in the shallow areas of the Yellow Sea (YS). Dynamically downscaled simulations enabled the determination of practical sea-level rise (PSLR), including changes in tidal amplitude and natural variability. Under RCP 8.5 scenario, the maximum PSLR was ∼85 cm in the YS and East China Sea (ECS), and ∼78 cm in the EJS. The contribution of natural sea-level variability changes in the EJS was greater than that in the YS and ECS, whereas changes in the tidal contribution were higher in the YS and ECS. Accordingly, high-resolution RCMs provided spatially different PSLR estimates, indicating the importance of improving model resolution for local sea-level projections in marginal seas.

2018

Kim, Y.-Y., Y. H. Kim* and Y.-K. Cho
Role of cold water and beta-effect in the formation of the East Korean Warm Current in the East/Japan Sea: a numerical experiment
Ocean Dynamics

The contributions of bottom cold water and planetary β-effect to the formation of the East Korean Warm Current (EKWC), the western boundary current in the East/Japan Sea (EJS), were evaluated using an idealized three-dimensional numerical model. The model results suggest that the bottom cold water and, to a lesser extent, the planetary β-effect both contribute to the formation of the EKWC. The cold water functions as the bottom of the upper layer, to control the EKWC via conservation of potential vorticity. It is known that cold waters, such as the North Korean Cold Water and Korea Strait Bottom Cold Water often observed during summer along the southwestern coast of the EJS, originate from the winter convection in the northern area. Observational studies consistently show that the EKWC strengthens in summer when the cold water extends further south along the western boundary.

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Email

yongyub.kim@uib.no

Location

Allégaten 70, 5007, Bergen, Norway